profit
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Contents:
proFit
Getting Started
Configuration
Cluster Support
Code structure
Components
Contributing to proFit
API Reference
profit
Index
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Index
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Σ
Symbols
#fits (configuration value)
#points (configuration value)
_
__call__() (profit.sur.gp.sklearn_surrogate.LinearEmbedding method)
__class_getitem__() (profit.util.base_class.CustomABC class method)
(profit.util.component.Component class method)
__del__() (profit.run.zeromq.ZeroMQRunnerInterface method)
(profit.run.zeromq.ZeroMQWorkerInterface method)
__getitem__() (profit.config.AbstractConfig method)
(profit.util.variable.Variable method)
(profit.util.variable.VariableGroup method)
__init_subclass__() (profit.util.component.Component class method)
__missing__() (profit.util.SafeDict method)
(profit.util.util.SafeDict method)
__repr__() (profit.run.local.LocalRunner method)
(profit.run.Runner method)
(profit.run.runner.Runner method)
(profit.run.slurm.SlurmRunner method)
(profit.sur.gp.sklearn_surrogate.LinearEmbedding method)
__version__ (in module profit)
_components (profit.util.component.Component attribute)
_defaults (profit.sur.ann.artificial_neural_network.ANN attribute)
_find_next_candidates() (profit.al.aquisition_functions.AcquisitionFunction method)
_mapping_tag (in module profit.config)
_recursive_dict2hdf() (profit.util.file_handler.HDF5Handler class method)
_set_hyperparameters_from_model() (profit.sur.gp.custom_surrogate.GPSurrogate method)
(profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate method)
(profit.sur.gp.GPSurrogate method)
(profit.sur.gp.gpy_surrogate.GPySurrogate method)
(profit.sur.gp.GPySurrogate method)
(profit.sur.gp.sklearn_surrogate.SklearnGPSurrogate method)
A
AbstractConfig (class in profit.config)
accepted (profit.al.mcmc_al.McmcAL attribute)
(profit.al.McmcAL attribute)
AcquisitionFunction (class in profit.al.aquisition_functions)
AcquisitionFunctionConfig (class in profit.config)
active_learning (in module profit.defaults)
ActiveLearning (class in profit.al)
(class in profit.al.active_learning)
ActiveLearningVariable (class in profit.util.variable)
add noise covariance (configuration value)
add() (profit.util.variable.VariableGroup method)
add_border() (in module profit.ui.hist_utils)
add_input_encoder() (profit.sur.sur.Surrogate method)
(profit.sur.Surrogate method)
add_output_encoder() (profit.sur.sur.Surrogate method)
(profit.sur.Surrogate method)
add_training_data() (profit.sur.ann.artificial_neural_network.ANNSurrogate method)
(profit.sur.gp.custom_surrogate.GPSurrogate method)
(profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate method)
(profit.sur.gp.GPSurrogate method)
(profit.sur.gp.gpy_surrogate.CoregionalizedGPySurrogate method)
(profit.sur.gp.gpy_surrogate.GPySurrogate method)
(profit.sur.gp.GPySurrogate method)
(profit.sur.gp.sklearn_surrogate.SklearnGPSurrogate method)
al_acquisition_function_alternating_exploration (in module profit.defaults)
al_acquisition_function_expected_improvement (in module profit.defaults)
al_acquisition_function_expected_improvement_2 (in module profit.defaults)
al_acquisition_function_exploration_with_distance_penalty (in module profit.defaults)
al_acquisition_function_probability_of_improvement (in module profit.defaults)
al_acquisition_function_simple_exploration (in module profit.defaults)
al_acquisition_function_weighted_exploration (in module profit.defaults)
al_algorithm_mcmc (in module profit.defaults)
al_algorithm_simple (in module profit.defaults)
al_parameters (profit.al.aquisition_functions.AcquisitionFunction attribute)
(profit.al.aquisition_functions.AlternatingAF attribute)
ALConfig (class in profit.config)
AlgorithmALConfig (class in profit.config)
all (profit.util.variable.VariableGroup property)
alpha (profit.sur.gp.custom_surrogate.GPSurrogate property)
(profit.sur.gp.GPSurrogate property)
AlternatingAF (class in profit.al.aquisition_functions)
AlternatingExplorationConfig (class in profit.config)
ANN (class in profit.sur.ann.artificial_neural_network)
ANNSurrogate (class in profit.sur.ann.artificial_neural_network)
app (in module profit.ui.condhist)
as_dict (profit.util.variable.VariableGroup property)
as_dict() (profit.sur.linreg.chaospy_linreg.ChaospyLinReg method)
(profit.sur.linreg.ChaospyLinReg method)
(profit.util.variable.OutputVariable method)
(profit.util.variable.Variable method)
associated_types (profit.util.file_handler.FileHandler attribute)
Autoencoder (class in profit.sur.ann.artificial_neural_network)
B
base_dir (in module profit.defaults)
BaseConfig (class in profit.config)
bind (profit.run.zeromq.ZeroMQRunnerInterface property)
C
calculate_loss() (profit.al.aquisition_functions.AcquisitionFunction method)
(profit.al.aquisition_functions.ExpectedImprovement method)
(profit.al.aquisition_functions.ExpectedImprovement2 method)
(profit.al.aquisition_functions.ExplorationWithDistancePenalty method)
(profit.al.aquisition_functions.ProbabilityOfImprovement method)
(profit.al.aquisition_functions.SimpleExploration method)
(profit.al.aquisition_functions.WeightedExploration method)
cancel() (profit.run.local.ForkRunner method)
(profit.run.local.LocalRunner method)
(profit.run.Runner method)
(profit.run.runner.Runner method)
(profit.run.slurm.SlurmRunner method)
cancel_all() (profit.run.Runner method)
(profit.run.runner.Runner method)
(profit.run.slurm.SlurmRunner method)
change_work_dir() (profit.run.Runner method)
(profit.run.runner.Runner method)
ChaospyLinReg (class in profit.sur.linreg)
(class in profit.sur.linreg.chaospy_linreg)
check_ndim() (in module profit.util)
(in module profit.util.util)
check_runs() (profit.run.Runner method)
(profit.run.runner.Runner method)
clean() (profit.run.interface.RunnerInterface method)
(profit.run.interface.WorkerInterface method)
(profit.run.local.MemmapRunnerInterface method)
(profit.run.local.MemmapWorkerInterface method)
(profit.run.Runner method)
(profit.run.runner.Runner method)
(profit.run.RunnerInterface method)
(profit.run.slurm.SlurmRunner method)
(profit.run.Worker method)
(profit.run.worker.Worker method)
(profit.run.WorkerInterface method)
(profit.run.zeromq.ZeroMQRunnerInterface method)
(profit.run.zeromq.ZeroMQWorkerInterface method)
color (configuration value)
CommandWorker (class in profit.run.command)
Component (class in profit.util.component)
component (profit.util.component.Component attribute)
config (profit.run.interface.RunnerInterface property)
(profit.run.interface.WorkerInterface property)
(profit.run.local.LocalRunner property)
(profit.run.local.MemmapRunnerInterface property)
(profit.run.local.MemmapWorkerInterface property)
(profit.run.Runner property)
(profit.run.runner.Runner property)
(profit.run.RunnerInterface property)
(profit.run.slurm.SlurmRunner property)
(profit.run.WorkerInterface property)
(profit.run.zeromq.ZeroMQRunnerInterface property)
(profit.run.zeromq.ZeroMQWorkerInterface property)
config_file (in module profit.defaults)
connect() (profit.run.zeromq.ZeroMQWorkerInterface method)
connection (profit.run.zeromq.ZeroMQWorkerInterface property)
constant() (in module profit.util.variable)
convert_relative_symlinks() (profit.run.command.TemplatePreprocessor static method)
copy_template() (profit.run.command.TemplatePreprocessor class method)
CoregionalizedGPySurrogate (class in profit.sur.gp.gpy_surrogate)
cost() (profit.al.mcmc_al.McmcAL method)
(profit.al.McmcAL method)
create() (profit.util.variable.Variable class method)
create_from_str() (profit.util.variable.Variable class method)
create_subconfig() (profit.config.AbstractConfig method)
create_Xpred() (profit.util.variable.ActiveLearningVariable method)
(profit.util.variable.InputVariable method)
CustomABC (class in profit.util.base_class)
D
d2kern (in module profit.sur.gp.backend.init_kernels)
data (in module profit.ui.condhist)
decode() (profit.sur.encoders.Encoder method)
(profit.sur.encoders.ExcludeEncoder method)
(profit.sur.encoders.KarhunenLoeve method)
(profit.sur.encoders.PCA method)
decode_func() (profit.sur.encoders.Encoder method)
(profit.sur.encoders.Log10Encoder method)
(profit.sur.encoders.Normalization method)
decode_hyperparameters() (profit.sur.encoders.Encoder method)
(profit.sur.encoders.Normalization method)
(profit.sur.gp.gaussian_process.GaussianProcess method)
(profit.sur.gp.GaussianProcess method)
decode_predict_data() (profit.sur.sur.Surrogate method)
(profit.sur.Surrogate method)
decode_training_data() (profit.sur.sur.Surrogate method)
(profit.sur.Surrogate method)
decode_variance() (profit.sur.encoders.Encoder method)
(profit.sur.encoders.KarhunenLoeve method)
(profit.sur.encoders.Normalization method)
(profit.sur.encoders.PCA method)
default_Xpred() (profit.sur.sur.Surrogate method)
(profit.sur.Surrogate method)
DefaultConfig (class in profit.config)
defaults (profit.config.AbstractConfig attribute)
(profit.config.AcquisitionFunctionConfig attribute)
(profit.config.ALConfig attribute)
(profit.config.AlgorithmALConfig attribute)
(profit.config.AlternatingExplorationConfig attribute)
(profit.config.DefaultConfig attribute)
(profit.config.ExpectedImprovement2Config attribute)
(profit.config.ExpectedImprovementConfig attribute)
(profit.config.ExplorationWithDistancePenaltyConfig attribute)
(profit.config.FitConfig attribute)
(profit.config.McmcConfig attribute)
(profit.config.ProbabilityOfImprovementConfig attribute)
(profit.config.RunConfig attribute)
(profit.config.SimpleALConfig attribute)
(profit.config.SimpleExplorationConfig attribute)
(profit.config.UIConfig attribute)
(profit.config.WeightedExplorationConfig attribute)
delete_sample() (profit.util.variable.VariableGroup method)
delete_variable() (profit.util.variable.VariableGroup method)
dens_hist() (in module profit.ui.hist_utils)
df (in module profit.ui.condhist)
dict_constructor() (in module profit.config)
disconnect() (profit.run.zeromq.ZeroMQWorkerInterface method)
display fit (configuration value)
dkern (in module profit.sur.gp.backend.init_kernels)
do_mcmc() (profit.al.mcmc_al.McmcAL method)
(profit.al.McmcAL method)
draw_hist() (in module profit.ui.hist_utils)
dtype (profit.util.variable.Variable attribute)
dx (profit.al.mcmc_al.McmcAL attribute)
(profit.al.McmcAL attribute)
E
encode() (profit.sur.encoders.Encoder method)
(profit.sur.encoders.ExcludeEncoder method)
(profit.sur.encoders.KarhunenLoeve method)
(profit.sur.encoders.Normalization method)
(profit.sur.encoders.PCA method)
encode_func() (profit.sur.encoders.Encoder method)
(profit.sur.encoders.Log10Encoder method)
(profit.sur.encoders.Normalization method)
encode_predict_data() (profit.sur.sur.Surrogate method)
(profit.sur.Surrogate method)
encode_training_data() (profit.sur.sur.Surrogate method)
(profit.sur.Surrogate method)
Encoder (class in profit.sur.encoders)
EPSILON (profit.al.aquisition_functions.AcquisitionFunction attribute)
error (configuration value)
EXCLUDE_FROM_HALTON (in module profit.util.variable)
ExcludeEncoder (class in profit.sur.encoders)
ExpectedImprovement (class in profit.al.aquisition_functions)
ExpectedImprovement2 (class in profit.al.aquisition_functions)
ExpectedImprovement2Config (class in profit.config)
ExpectedImprovementConfig (class in profit.config)
ExplorationWithDistancePenalty (class in profit.al.aquisition_functions)
ExplorationWithDistancePenaltyConfig (class in profit.config)
external_stylesheets (in module profit.ui.condhist)
F
f() (profit.al.mcmc_al.McmcAL method)
(profit.al.McmcAL method)
features (profit.sur.encoders.KarhunenLoeve property)
(profit.sur.encoders.PCA property)
fig_hist() (in module profit.ui.hist_utils)
FileHandler (class in profit.util.file_handler)
files (in module profit.defaults)
fill() (profit.run.Runner method)
(profit.run.runner.Runner method)
fill_output() (profit.run.Runner method)
(profit.run.runner.Runner method)
fill_run_dir_single() (profit.run.command.TemplatePreprocessor method)
fill_template() (profit.run.command.TemplatePreprocessor method)
fill_template_file() (profit.run.command.TemplatePreprocessor class method)
find_next_candidates() (profit.al.aquisition_functions.AcquisitionFunction method)
(profit.al.aquisition_functions.AlternatingAF method)
(profit.al.aquisition_functions.ExpectedImprovement method)
(profit.al.aquisition_functions.ExpectedImprovement2 method)
(profit.al.aquisition_functions.ProbabilityOfImprovement method)
(profit.al.aquisition_functions.WeightedExploration method)
(profit.al.simple_al.SimpleAL method)
(profit.al.SimpleAL method)
fit (in module profit.defaults)
fit-color (configuration value)
fit-opacity (configuration value)
fit_gaussian_process (in module profit.defaults)
fit_linear_regression (in module profit.defaults)
FitConfig (class in profit.config)
fixed_sigma_n (profit.sur.ann.artificial_neural_network.ANN attribute)
(profit.sur.ann.artificial_neural_network.ANNSurrogate attribute)
(profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate attribute)
(profit.sur.gp.gaussian_process.GaussianProcess attribute)
(profit.sur.gp.GaussianProcess attribute)
(profit.sur.sur.Surrogate attribute)
(profit.sur.Surrogate attribute)
flat_output_data (profit.run.Runner property)
(profit.run.runner.Runner property)
flatten_struct() (in module profit.util)
(in module profit.util.util)
ForkRunner (class in profit.run.local)
format_hist() (in module profit.ui.hist_utils)
formatted_output (profit.util.variable.VariableGroup property)
forward() (profit.sur.ann.artificial_neural_network.Autoencoder method)
from_config() (profit.al.active_learning.ActiveLearning class method)
(profit.al.ActiveLearning class method)
(profit.al.mcmc_al.McmcAL class method)
(profit.al.McmcAL class method)
(profit.al.simple_al.SimpleAL class method)
(profit.al.SimpleAL class method)
(profit.run.Runner class method)
(profit.run.runner.Runner class method)
(profit.run.Worker class method)
(profit.run.worker.Worker class method)
(profit.sur.ann.artificial_neural_network.ANN class method)
(profit.sur.gp.gaussian_process.GaussianProcess class method)
(profit.sur.gp.GaussianProcess class method)
(profit.sur.linreg.chaospy_linreg.ChaospyLinReg class method)
(profit.sur.linreg.ChaospyLinReg class method)
(profit.sur.sur.Surrogate class method)
(profit.sur.Surrogate class method)
from_env() (profit.run.Worker class method)
(profit.run.worker.Worker class method)
from_file() (profit.config.BaseConfig class method)
from_params() (profit.util.SafeDict class method)
(profit.util.util.SafeDict class method)
funlist (in module profit.sur.gp.backend.init_kernels)
,
[1]
G
GaussianProcess (class in profit.sur.gp)
(class in profit.sur.gp.gaussian_process)
gen_callback() (in module profit.ui.condhist)
generate_from_halton() (profit.util.variable.VariableGroup method)
generate_script() (profit.run.slurm.SlurmRunner method)
generate_table() (in module profit.ui.condhist)
generate_values() (profit.util.variable.ActiveLearningVariable method)
(profit.util.variable.InputVariable method)
get() (profit.config.AbstractConfig method)
get_label() (profit.util.base_class.CustomABC class method)
get_marginal_variance() (profit.sur.gp.custom_surrogate.GPSurrogate method)
(profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate method)
(profit.sur.gp.GPSurrogate method)
GPSurrogate (class in profit.sur.gp)
(class in profit.sur.gp.custom_surrogate)
GPySurrogate (class in profit.sur.gp)
(class in profit.sur.gp.gpy_surrogate)
H
halton() (in module profit.util.halton)
(in module profit.util.variable)
handle_msg() (profit.run.zeromq.ZeroMQRunnerInterface method)
handle_subconfig() (profit.sur.ann.artificial_neural_network.ANN class method)
hdf2dict() (profit.util.file_handler.HDF5Handler static method)
hdf2numpy() (profit.util.file_handler.HDF5Handler static method)
HDF5Handler (class in profit.util.file_handler)
HDF5Postprocessor() (in module profit.run.command)
hess_inv (profit.sur.gp.custom_surrogate.GPSurrogate attribute)
(profit.sur.gp.GPSurrogate attribute)
hyperparameter_length_scale (profit.sur.gp.sklearn_surrogate.LinearEmbedding property)
hyperparameters (profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate attribute)
(profit.sur.gp.gaussian_process.GaussianProcess attribute)
(profit.sur.gp.GaussianProcess attribute)
I
include (in module profit.defaults)
independent() (in module profit.util.variable)
IndependentVariable (class in profit.util.variable)
infer_hyperparameters() (profit.sur.gp.gaussian_process.GaussianProcess method)
(profit.sur.gp.GaussianProcess method)
init_app() (in module profit.ui)
(in module profit.ui.app)
init_eigvalues() (profit.sur.encoders.KarhunenLoeve method)
(profit.sur.encoders.PCA method)
input (profit.util.variable.VariableGroup property)
input_data (profit.run.Runner property)
(profit.run.runner.Runner property)
input_dict (profit.util.variable.VariableGroup property)
input_encoders (profit.sur.ann.artificial_neural_network.ANN attribute)
(profit.sur.ann.artificial_neural_network.ANNSurrogate attribute)
(profit.sur.sur.Surrogate attribute)
(profit.sur.Surrogate attribute)
input_list (profit.util.variable.VariableGroup property)
InputVariable (class in profit.util.variable)
internal_vars (profit.run.interface.RunnerInterface attribute)
(profit.run.RunnerInterface attribute)
invert() (in module profit.sur.gp.backend.gp_functions)
invert_cholesky() (in module profit.sur.gp.backend.gp_functions)
items() (profit.config.AbstractConfig method)
J
JSONPostprocessor() (in module profit.run.command)
K
KarhunenLoeve (class in profit.sur.encoders)
kern (in module profit.sur.gp.backend.init_kernels)
kernel (profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate attribute)
(profit.sur.gp.gaussian_process.GaussianProcess attribute)
(profit.sur.gp.GaussianProcess attribute)
kind (profit.util.variable.Variable attribute)
kind_dict (profit.util.variable.VariableGroup property)
krun (profit.al.active_learning.ActiveLearning attribute)
(profit.al.ActiveLearning attribute)
Ky (profit.sur.gp.custom_surrogate.GPSurrogate property)
(profit.sur.gp.GPSurrogate property)
L
l (in module profit.sur.gp.backend.init_kernels)
label (profit.sur.encoders.Encoder attribute)
(profit.sur.encoders.KarhunenLoeve attribute)
(profit.sur.encoders.PCA attribute)
labels (profit.al.active_learning.ActiveLearning attribute)
(profit.al.ActiveLearning attribute)
(profit.al.aquisition_functions.AcquisitionFunction attribute)
(profit.al.mcmc_al.McmcAL attribute)
(profit.al.McmcAL attribute)
(profit.al.simple_al.SimpleAL attribute)
(profit.al.SimpleAL attribute)
(profit.config.AbstractConfig attribute)
(profit.config.AcquisitionFunctionConfig attribute)
(profit.config.ALConfig attribute)
(profit.config.AlgorithmALConfig attribute)
(profit.config.AlternatingExplorationConfig attribute)
(profit.config.BaseConfig attribute)
(profit.config.DefaultConfig attribute)
(profit.config.ExpectedImprovement2Config attribute)
(profit.config.ExpectedImprovementConfig attribute)
(profit.config.ExplorationWithDistancePenaltyConfig attribute)
(profit.config.FitConfig attribute)
(profit.config.McmcConfig attribute)
(profit.config.ProbabilityOfImprovementConfig attribute)
(profit.config.RunConfig attribute)
(profit.config.SimpleALConfig attribute)
(profit.config.SimpleExplorationConfig attribute)
(profit.config.UIConfig attribute)
(profit.config.WeightedExplorationConfig attribute)
(profit.sur.encoders.Encoder attribute)
(profit.sur.sur.Surrogate attribute)
(profit.sur.Surrogate attribute)
(profit.util.base_class.CustomABC attribute)
(profit.util.file_handler.FileHandler attribute)
(profit.util.variable.Variable attribute)
learn() (profit.al.active_learning.ActiveLearning method)
(profit.al.ActiveLearning method)
(profit.al.mcmc_al.McmcAL method)
(profit.al.McmcAL method)
(profit.al.simple_al.SimpleAL method)
(profit.al.SimpleAL method)
linear() (in module profit.util.variable)
LinearEmbedding (class in profit.sur.gp.sklearn_surrogate)
LinearEmbedding() (in module profit.sur.gp.backend.python_kernels)
LinearRegression (class in profit.sur.linreg)
(class in profit.sur.linreg.linear_regression)
list (profit.util.variable.VariableGroup attribute)
load() (profit.util.file_handler.FileHandler class method)
(profit.util.file_handler.HDF5Handler class method)
(profit.util.file_handler.PickleHandler class method)
(profit.util.file_handler.TxtHandler class method)
load_config_from_py() (in module profit.config)
load_includes() (in module profit.util)
(in module profit.util.util)
(profit.config.BaseConfig method)
load_model() (profit.sur.ann.artificial_neural_network.ANN class method)
(profit.sur.gp.custom_surrogate.GPSurrogate class method)
(profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate class method)
(profit.sur.gp.GPSurrogate class method)
(profit.sur.gp.gpy_surrogate.CoregionalizedGPySurrogate class method)
(profit.sur.gp.gpy_surrogate.GPySurrogate class method)
(profit.sur.gp.GPySurrogate class method)
(profit.sur.gp.sklearn_surrogate.SklearnGPSurrogate class method)
(profit.sur.linreg.chaospy_linreg.ChaospyLinReg class method)
(profit.sur.linreg.ChaospyLinReg class method)
(profit.sur.sur.Surrogate class method)
(profit.sur.Surrogate class method)
LocalRunner (class in profit.run.local)
log (configuration value)
Log10Encoder (class in profit.sur.encoders)
log_likelihood (profit.al.mcmc_al.McmcAL attribute)
(profit.al.McmcAL attribute)
logger (profit.run.zeromq.ZeroMQRunnerInterface attribute)
loguniform() (in module profit.util.variable)
M
main() (in module profit.main)
(in module profit.run.worker)
marginal_variance_BBQ() (in module profit.sur.gp.backend.gp_functions)
McmcAL (class in profit.al)
(class in profit.al.mcmc_al)
McmcConfig (class in profit.config)
MemmapRunnerInterface (class in profit.run.local)
MemmapWorkerInterface (class in profit.run.local)
model (profit.sur.gp.gpy_surrogate.CoregionalizedGPySurrogate attribute)
(profit.sur.gp.gpy_surrogate.GPySurrogate attribute)
(profit.sur.gp.GPySurrogate attribute)
(profit.sur.gp.sklearn_surrogate.SklearnGPSurrogate attribute)
(profit.sur.linreg.chaospy_linreg.ChaospyLinReg property)
(profit.sur.linreg.ChaospyLinReg property)
module
profit
profit.al
profit.al.active_learning
profit.al.aquisition_functions
profit.al.mcmc_al
profit.al.simple_al
profit.config
profit.defaults
profit.main
profit.run
profit.run.command
profit.run.interface
profit.run.local
profit.run.runner
profit.run.slurm
profit.run.worker
profit.run.zeromq
profit.sur
profit.sur.ann
profit.sur.ann.artificial_neural_network
profit.sur.encoders
profit.sur.gp
profit.sur.gp.backend
profit.sur.gp.backend.gp_functions
profit.sur.gp.backend.init_kernels
profit.sur.gp.backend.python_kernels
profit.sur.gp.custom_surrogate
profit.sur.gp.gaussian_process
profit.sur.gp.gpy_surrogate
profit.sur.gp.sklearn_surrogate
profit.sur.linreg
profit.sur.linreg.chaospy_linreg
profit.sur.linreg.linear_regression
profit.sur.sur
profit.ui
profit.ui.app
profit.ui.condhist
profit.ui.hist_utils
profit.util
profit.util.base_class
profit.util.component
profit.util.file_handler
profit.util.halton
profit.util.util
profit.util.variable
mu_part() (profit.al.aquisition_functions.ExpectedImprovement method)
multi-fit (configuration value)
MultiOutputGPSurrogate (class in profit.sur.gp.custom_surrogate)
N
name (profit.util.variable.Variable attribute)
named_input (profit.util.variable.VariableGroup property)
named_output (profit.util.variable.VariableGroup property)
named_value (profit.util.variable.Variable property)
ndim (profit.al.mcmc_al.McmcAL attribute)
(profit.al.McmcAL attribute)
(profit.sur.ann.artificial_neural_network.ANN attribute)
(profit.sur.ann.artificial_neural_network.ANNSurrogate attribute)
(profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate attribute)
(profit.sur.gp.gaussian_process.GaussianProcess attribute)
(profit.sur.gp.GaussianProcess attribute)
(profit.sur.sur.Surrogate attribute)
(profit.sur.Surrogate attribute)
negative_log_likelihood() (in module profit.sur.gp.backend.gp_functions)
negative_log_likelihood_cholesky() (in module profit.sur.gp.backend.gp_functions)
normal() (in module profit.util.variable)
Normalization (class in profit.sur.encoders)
normalize() (profit.al.aquisition_functions.AcquisitionFunction method)
ntrain (in module profit.defaults)
NumpytxtPostprocessor() (in module profit.run.command)
O
optimize() (in module profit.sur.gp.backend.gp_functions)
(profit.sur.gp.custom_surrogate.GPSurrogate method)
(profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate method)
(profit.sur.gp.gaussian_process.GaussianProcess method)
(profit.sur.gp.GaussianProcess method)
(profit.sur.gp.GPSurrogate method)
(profit.sur.gp.gpy_surrogate.GPySurrogate method)
(profit.sur.gp.GPySurrogate method)
(profit.sur.gp.sklearn_surrogate.SklearnGPSurrogate method)
output (configuration value)
(profit.util.variable.VariableGroup property)
output_data (profit.run.Runner property)
(profit.run.runner.Runner property)
output_dict (profit.util.variable.VariableGroup property)
output_encoders (profit.sur.ann.artificial_neural_network.ANN attribute)
(profit.sur.ann.artificial_neural_network.ANNSurrogate attribute)
(profit.sur.sur.Surrogate attribute)
(profit.sur.Surrogate attribute)
output_list (profit.util.variable.VariableGroup property)
output_ndim (profit.sur.ann.artificial_neural_network.ANN attribute)
(profit.sur.ann.artificial_neural_network.ANNSurrogate attribute)
(profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate attribute)
(profit.sur.gp.gaussian_process.GaussianProcess attribute)
(profit.sur.gp.GaussianProcess attribute)
(profit.sur.sur.Surrogate attribute)
(profit.sur.Surrogate attribute)
OutputVariable (class in profit.util.variable)
P
param (in module profit.ui.condhist)
params2map() (in module profit.util)
(in module profit.util.util)
parse_entries() (profit.util.variable.ActiveLearningVariable class method)
(profit.util.variable.InputVariable class method)
(profit.util.variable.OutputVariable class method)
PCA (class in profit.sur.encoders)
PickleHandler (class in profit.util.file_handler)
plot() (profit.al.active_learning.ActiveLearning method)
(profit.al.ActiveLearning method)
(profit.al.mcmc_al.McmcAL method)
(profit.al.McmcAL method)
(profit.al.simple_al.SimpleAL method)
(profit.al.SimpleAL method)
(profit.sur.sur.Surrogate method)
(profit.sur.Surrogate method)
plot_mcmc() (profit.al.mcmc_al.McmcAL method)
(profit.al.McmcAL method)
poll() (profit.run.interface.RunnerInterface method)
(profit.run.local.ForkRunner method)
(profit.run.local.LocalRunner method)
(profit.run.Runner method)
(profit.run.runner.Runner method)
(profit.run.RunnerInterface method)
(profit.run.slurm.SlurmRunner method)
(profit.run.zeromq.ZeroMQRunnerInterface method)
poll_all() (profit.run.Runner method)
(profit.run.runner.Runner method)
(profit.run.slurm.SlurmRunner method)
post() (profit.run.command.Preprocessor method)
(profit.run.Preprocessor method)
post_train() (profit.sur.gp.custom_surrogate.GPSurrogate method)
(profit.sur.gp.GPSurrogate method)
(profit.sur.gp.sklearn_surrogate.SklearnGPSurrogate method)
(profit.sur.sur.Surrogate method)
(profit.sur.Surrogate method)
Postprocessor (class in profit.run)
(class in profit.run.command)
pre_predict() (profit.sur.sur.Surrogate method)
(profit.sur.Surrogate method)
pre_train() (profit.sur.gp.gaussian_process.GaussianProcess method)
(profit.sur.gp.GaussianProcess method)
(profit.sur.gp.gpy_surrogate.CoregionalizedGPySurrogate method)
(profit.sur.sur.Surrogate method)
(profit.sur.Surrogate method)
predict() (profit.sur.ann.artificial_neural_network.ANN method)
(profit.sur.ann.artificial_neural_network.ANNSurrogate method)
(profit.sur.gp.custom_surrogate.GPSurrogate method)
(profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate method)
(profit.sur.gp.gaussian_process.GaussianProcess method)
(profit.sur.gp.GaussianProcess method)
(profit.sur.gp.GPSurrogate method)
(profit.sur.gp.gpy_surrogate.CoregionalizedGPySurrogate method)
(profit.sur.gp.gpy_surrogate.GPySurrogate method)
(profit.sur.gp.GPySurrogate method)
(profit.sur.gp.sklearn_surrogate.SklearnGPSurrogate method)
(profit.sur.linreg.chaospy_linreg.ChaospyLinReg method)
(profit.sur.linreg.ChaospyLinReg method)
(profit.sur.sur.Surrogate method)
(profit.sur.Surrogate method)
predict_f() (in module profit.sur.gp.backend.gp_functions)
prepare() (profit.run.command.Preprocessor method)
(profit.run.command.TemplatePreprocessor method)
(profit.run.Preprocessor method)
Preprocessor (class in profit.run)
(class in profit.run.command)
primes_from_2_to() (in module profit.util.halton)
print_hyperparameters() (profit.sur.gp.gaussian_process.GaussianProcess method)
(profit.sur.gp.GaussianProcess method)
ProbabilityOfImprovement (class in profit.al.aquisition_functions)
ProbabilityOfImprovementConfig (class in profit.config)
process_entries() (profit.config.AbstractConfig method)
(profit.config.AcquisitionFunctionConfig method)
(profit.config.ALConfig method)
(profit.config.BaseConfig method)
(profit.config.FitConfig method)
(profit.config.McmcConfig method)
(profit.config.SimpleALConfig method)
profit
module
profit.al
module
profit.al.active_learning
module
profit.al.aquisition_functions
module
profit.al.mcmc_al
module
profit.al.simple_al
module
profit.config
module
profit.defaults
module
profit.main
module
profit.run
module
profit.run.command
module
profit.run.interface
module
profit.run.local
module
profit.run.runner
module
profit.run.slurm
module
profit.run.worker
module
profit.run.zeromq
module
profit.sur
module
profit.sur.ann
module
profit.sur.ann.artificial_neural_network
module
profit.sur.encoders
module
profit.sur.gp
module
profit.sur.gp.backend
module
profit.sur.gp.backend.gp_functions
module
profit.sur.gp.backend.init_kernels
module
profit.sur.gp.backend.python_kernels
module
profit.sur.gp.custom_surrogate
module
profit.sur.gp.gaussian_process
module
profit.sur.gp.gpy_surrogate
module
profit.sur.gp.sklearn_surrogate
module
profit.sur.linreg
module
profit.sur.linreg.chaospy_linreg
module
profit.sur.linreg.linear_regression
module
profit.sur.sur
module
profit.ui
module
profit.ui.app
module
profit.ui.condhist
module
profit.ui.hist_utils
module
profit.util
module
profit.util.base_class
module
profit.util.component
module
profit.util.file_handler
module
profit.util.halton
module
profit.util.util
module
profit.util.variable
module
Q
quasirand() (in module profit.util)
(in module profit.util.util)
R
RBF() (in module profit.sur.gp.backend.python_kernels)
register() (profit.util.base_class.CustomABC class method)
(profit.util.component.Component class method)
replace_template() (profit.run.command.TemplatePreprocessor static method)
repr (profit.sur.encoders.Encoder property)
represent_ordereddict() (in module profit.config)
request() (profit.run.zeromq.ZeroMQWorkerInterface method)
resize() (profit.run.interface.RunnerInterface method)
(profit.run.local.MemmapRunnerInterface method)
(profit.run.RunnerInterface method)
resolve_dependent() (profit.util.variable.OutputVariable method)
retrieve() (profit.run.command.Postprocessor method)
(profit.run.interface.WorkerInterface method)
(profit.run.local.MemmapWorkerInterface method)
(profit.run.Postprocessor method)
(profit.run.WorkerInterface method)
(profit.run.zeromq.ZeroMQWorkerInterface method)
run (in module profit.defaults)
run_dir (in module profit.defaults)
RunConfig (class in profit.config)
Runner (class in profit.run)
(class in profit.run.runner)
RunnerInterface (class in profit.run)
(class in profit.run.interface)
S
safe_path() (in module profit.util)
(in module profit.util.util)
SafeDict (class in profit.util)
(class in profit.util.util)
samples (profit.util.variable.VariableGroup attribute)
save() (profit.al.active_learning.ActiveLearning method)
(profit.al.ActiveLearning method)
(profit.al.mcmc_al.McmcAL method)
(profit.al.McmcAL method)
(profit.al.simple_al.SimpleAL method)
(profit.al.SimpleAL method)
(profit.util.file_handler.FileHandler class method)
(profit.util.file_handler.HDF5Handler class method)
(profit.util.file_handler.PickleHandler class method)
(profit.util.file_handler.TxtHandler class method)
save_intermediate() (profit.al.active_learning.ActiveLearning method)
(profit.al.ActiveLearning method)
save_model() (profit.sur.ann.artificial_neural_network.ANN method)
(profit.sur.gp.custom_surrogate.GPSurrogate method)
(profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate method)
(profit.sur.gp.GPSurrogate method)
(profit.sur.gp.gpy_surrogate.CoregionalizedGPySurrogate method)
(profit.sur.gp.gpy_surrogate.GPySurrogate method)
(profit.sur.gp.GPySurrogate method)
(profit.sur.gp.sklearn_surrogate.SklearnGPSurrogate method)
(profit.sur.linreg.chaospy_linreg.ChaospyLinReg method)
(profit.sur.linreg.ChaospyLinReg method)
(profit.sur.sur.Surrogate method)
(profit.sur.Surrogate method)
save_stats() (profit.al.mcmc_al.McmcAL method)
(profit.al.McmcAL method)
search_space (profit.al.simple_al.SimpleAL attribute)
(profit.al.SimpleAL attribute)
select_kernel() (profit.sur.gp.custom_surrogate.GPSurrogate method)
(profit.sur.gp.gaussian_process.GaussianProcess method)
(profit.sur.gp.GaussianProcess method)
(profit.sur.gp.GPSurrogate method)
(profit.sur.gp.gpy_surrogate.GPySurrogate method)
(profit.sur.gp.GPySurrogate method)
(profit.sur.gp.sklearn_surrogate.SklearnGPSurrogate method)
set_al_parameters() (profit.al.aquisition_functions.AcquisitionFunction method)
set_attributes() (profit.sur.gp.gaussian_process.GaussianProcess method)
(profit.sur.gp.GaussianProcess method)
set_defaults() (profit.config.AbstractConfig method)
set_model() (profit.sur.linreg.chaospy_linreg.ChaospyLinReg method)
(profit.sur.linreg.ChaospyLinReg method)
set_ytrain() (profit.sur.gp.custom_surrogate.GPSurrogate method)
(profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate method)
(profit.sur.gp.GPSurrogate method)
(profit.sur.gp.gpy_surrogate.CoregionalizedGPySurrogate method)
(profit.sur.gp.gpy_surrogate.GPySurrogate method)
(profit.sur.gp.GPySurrogate method)
(profit.sur.gp.sklearn_surrogate.SklearnGPSurrogate method)
SIGMA_EPSILON (profit.al.aquisition_functions.ExpectedImprovement attribute)
sigma_part() (profit.al.aquisition_functions.ExpectedImprovement method)
SimpleAL (class in profit.al)
(class in profit.al.simple_al)
SimpleALConfig (class in profit.config)
SimpleExploration (class in profit.al.aquisition_functions)
SimpleExplorationConfig (class in profit.config)
size (profit.run.interface.RunnerInterface property)
(profit.run.RunnerInterface property)
(profit.util.variable.Variable attribute)
SklearnGPSurrogate (class in profit.sur.gp.sklearn_surrogate)
SlurmRunner (class in profit.run.slurm)
socket (profit.run.zeromq.ZeroMQRunnerInterface attribute)
solve_cholesky() (in module profit.sur.gp.backend.gp_functions)
spawn() (profit.run.local.ForkRunner method)
(profit.run.local.LocalRunner method)
(profit.run.Runner method)
(profit.run.runner.Runner method)
(profit.run.slurm.SlurmRunner method)
spawn_array() (profit.run.Runner method)
(profit.run.runner.Runner method)
(profit.run.slurm.SlurmRunner method)
special_hyperparameter_decoding() (profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate method)
(profit.sur.gp.gaussian_process.GaussianProcess method)
(profit.sur.gp.GaussianProcess method)
(profit.sur.gp.gpy_surrogate.CoregionalizedGPySurrogate method)
(profit.sur.gp.gpy_surrogate.GPySurrogate method)
(profit.sur.gp.GPySurrogate method)
Surrogate (class in profit.sur)
(class in profit.sur.sur)
T
template_path (profit.run.command.TemplatePreprocessor property)
TemplatePreprocessor (class in profit.run.command)
time (profit.run.local.MemmapWorkerInterface property)
train() (profit.sur.ann.artificial_neural_network.ANN method)
(profit.sur.ann.artificial_neural_network.ANNSurrogate method)
(profit.sur.ann.artificial_neural_network.Autoencoder method)
(profit.sur.gp.custom_surrogate.GPSurrogate method)
(profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate method)
(profit.sur.gp.gaussian_process.GaussianProcess method)
(profit.sur.gp.GaussianProcess method)
(profit.sur.gp.GPSurrogate method)
(profit.sur.gp.gpy_surrogate.CoregionalizedGPySurrogate method)
(profit.sur.gp.gpy_surrogate.GPySurrogate method)
(profit.sur.gp.GPySurrogate method)
(profit.sur.gp.sklearn_surrogate.SklearnGPSurrogate method)
(profit.sur.linreg.chaospy_linreg.ChaospyLinReg method)
(profit.sur.linreg.ChaospyLinReg method)
(profit.sur.sur.Surrogate method)
(profit.sur.Surrogate method)
trained (profit.sur.ann.artificial_neural_network.ANN attribute)
(profit.sur.ann.artificial_neural_network.ANNSurrogate attribute)
(profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate attribute)
(profit.sur.gp.gaussian_process.GaussianProcess attribute)
(profit.sur.gp.GaussianProcess attribute)
(profit.sur.linreg.linear_regression.LinearRegression attribute)
(profit.sur.linreg.LinearRegression attribute)
(profit.sur.sur.Surrogate attribute)
(profit.sur.Surrogate attribute)
transform() (profit.sur.linreg.chaospy_linreg.ChaospyLinReg method)
(profit.sur.linreg.ChaospyLinReg method)
transmit() (profit.run.interface.WorkerInterface method)
(profit.run.local.MemmapWorkerInterface method)
(profit.run.WorkerInterface method)
(profit.run.zeromq.ZeroMQWorkerInterface method)
two (in module profit.al.mcmc_al)
TxtHandler (class in profit.util.file_handler)
U
ui (in module profit.defaults)
UIConfig (class in profit.config)
uniform() (in module profit.util.variable)
update() (profit.config.AbstractConfig method)
(profit.config.DefaultConfig method)
(profit.config.FitConfig method)
(profit.config.RunConfig method)
update_data() (profit.al.active_learning.ActiveLearning method)
(profit.al.ActiveLearning method)
(profit.al.mcmc_al.McmcAL method)
(profit.al.McmcAL method)
update_run() (profit.al.active_learning.ActiveLearning method)
(profit.al.ActiveLearning method)
(profit.al.mcmc_al.McmcAL method)
(profit.al.McmcAL method)
(profit.al.simple_al.SimpleAL method)
(profit.al.SimpleAL method)
V
VALID_FORMATS (in module profit.config)
value (profit.util.variable.Variable attribute)
van_der_corput() (in module profit.util.halton)
Variable (class in profit.util.variable)
VariableGroup (class in profit.util.variable)
variables (in module profit.defaults)
W
wait() (profit.run.Runner method)
(profit.run.runner.Runner method)
wait_all() (profit.run.Runner method)
(profit.run.runner.Runner method)
warmup() (profit.al.active_learning.ActiveLearning method)
(profit.al.ActiveLearning method)
(profit.al.mcmc_al.McmcAL method)
(profit.al.McmcAL method)
(profit.al.simple_al.SimpleAL method)
(profit.al.SimpleAL method)
WeightedExploration (class in profit.al.aquisition_functions)
WeightedExplorationConfig (class in profit.config)
work() (profit.run.command.CommandWorker method)
(profit.run.Worker method)
(profit.run.worker.Worker method)
Worker (class in profit.run)
(class in profit.run.worker)
WorkerInterface (class in profit.run)
(class in profit.run.interface)
wrap() (profit.run.command.Postprocessor class method)
(profit.run.command.Preprocessor class method)
(profit.run.Postprocessor class method)
(profit.run.Preprocessor class method)
(profit.run.Worker class method)
(profit.run.worker.Worker class method)
X
x | y | z (configuration value)
Xpred (profit.al.mcmc_al.McmcAL attribute)
(profit.al.McmcAL attribute)
(profit.al.simple_al.SimpleAL attribute)
(profit.al.SimpleAL attribute)
Xtrain (profit.al.mcmc_al.McmcAL attribute)
(profit.al.McmcAL attribute)
(profit.sur.ann.artificial_neural_network.ANN attribute)
(profit.sur.ann.artificial_neural_network.ANNSurrogate attribute)
(profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate attribute)
(profit.sur.gp.gaussian_process.GaussianProcess attribute)
(profit.sur.gp.GaussianProcess attribute)
(profit.sur.sur.Surrogate attribute)
(profit.sur.Surrogate attribute)
Y
ytrain (profit.sur.ann.artificial_neural_network.ANN attribute)
(profit.sur.ann.artificial_neural_network.ANNSurrogate attribute)
(profit.sur.gp.custom_surrogate.MultiOutputGPSurrogate attribute)
(profit.sur.gp.gaussian_process.GaussianProcess attribute)
(profit.sur.gp.GaussianProcess attribute)
(profit.sur.sur.Surrogate attribute)
(profit.sur.Surrogate attribute)
Z
ZeroMQRunnerInterface (class in profit.run.zeromq)
ZeroMQWorkerInterface (class in profit.run.zeromq)
Σ
σ-confidence (configuration value)
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v0.4
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